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Spring 2006 talks

01/20/2006 Ping Ma, Statistics 
01/27/2006 Brendan Frey, Engineering (U. Toronto) 
02/03/2006 Charles Whitfield, Entomology 
02/17/2006 Jose Meseguer, Computer Science 
02/24/2006 Xinguang Zhu, Plant Science 
03/03/2006 Jing Jiang, Computer Science 
03/10/2006 Bioinformatics Summit Week 
03/17/2006 Carlos Santos, Bioinformatics (U. Mich.) 
03/24/2006 UIUC spring break 
03/31/2006 Mike Colvin, Natural Sciences (UC-Merced) 
04/07/2006 No meeting 
04/14/2006 Huixia (Judy) Wang, Statistics 
04/21/2006 Jay Mittenthal, Cell & Structural Biology 
04/28/2006 William Hersh, Medical Informatics (OHSU) 
05/05/2006 Michael Erdmann (Carnegie Mellon) 
Fall 2005 talks

08/26/2005 Sheng Zhong, Bioengineering 
09/02/2005 Richard LeDuc, NIDA Center for Neuroproteomics 
09/09/2005 Xifeng Yan, Computer Science 
09/16/2005 Xu Ling, Computer Science 
09/23/2005 Saurabh Sinha, Computer Science 
09/30/2005 Hui Fang, Computer Science 
10/07/2005 Bruce Schatz, Medical Information Sciences 
10/14/2005 Kathy Lu, Bioengineering 
10/21/2005 Peter Bajcsy, NCSA 
10/28/2005 Uriel Kitron, Veterinary Medicine 
11/04/2005 Denis Larkin, Animal Sciences 
11/11/2005 Matthew Hudson, Crop Sciences 
12/02/2005 Sandra Rodriguez-Zas, Animal Sciences 
Spring 2005 talks

Charles Whitfield (Entomology) 1/28/05 
Peter Bajcsy (Automated Learning Group) 2/4/05 
Wei Xie (Chemical & Biomolecular Engineering) 2/11/05 
Gustavo Caetano-Anolles (Crop Science) 2/18/05 
Bruce Schatz (GSLIS; IGB) 2/25/05 
Xinguang Zhu (Plant Science) 3/4/05 
Gary Olsen (Microbiology) 3/11/05 
Tao Tao (Computer Science) 3/18/05 
Sameer Varma (Biophysics and Computational Biology) 4/1/05 
Christine Elsik (Texas A&M Univ.) 4/8/05 
Xin He (Bioinformatics MS Option, Computer Science) 4/15/05 
Xinghua Lu (Medical Univ. of S. Carolina) 4/22/05 
Spring 2006 talks
Date Event Related link  
02/17/2006 Jose Meseguer, Computer Science Jose Meseguer's home page 

Title: Bio-Pathway Logic

Abstract: The talk will discuss a style of high-level bioinformatics models of cell biology that can be used to study biological pathways. The models are based on a simple logic called rewriting logic which is efficiently implemented and supported by formal analysis tools in the Maude language. These models are very natural, because a biochemical reaction that may have for example a textbook description of the form:
     A B -C D
can be simultaneously understood as a rewrite rule, so that cell dynamics is modeled as concurrent rewriting. I will explain how these models are then executable and analyzable. The talk reports on joint work with colleagues at SRI International and focuses on the essential ideas. Towards the end I will describe further developments and future possible generalizations of the model.

Biography: Jose Meseguer is Professor of Computer Science at UIUC. His main interests are in Formal Methods and Semantics of Computation. He proposed rewriting logic in 1990 and has led the design of the Maude language. He has published about 200 scientific papers, many of which are highly cited in the literature.